PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010931837.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 471aa    MW: 53941.9 Da    PI: 7.3018
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010931837.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.7e-07731127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ykt+lC  ++r G C +  +C+FaHg+
  XP_010931837.1  7 YKTKLCILYQR-GRCTR-QSCNFAHGE 31
                    9**********.*****.*******96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.75E-5436IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.291632IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-10636IPR000571Zinc finger, CCCH-type
SMARTSM003560.01631IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4731IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MLGRKLYKTK LCILYQRGRC TRQSCNFAHG EAELRRFAGS FSGRREYRNG NLRGKLDRRH  60
SPHRRYSPVR DARGHHSYHS HKSISHDRGS SHSRSPIKRS ERRYRKKQRM DGESDVSGSF  120
NISDGSEDIK KGDKVSFYNE RIDLEEQIKQ IQLDIEMLDD HKSQLEIFLE EKVDEAQKLS  180
SRIEDLDSKL NKEQEDCKRC HFDYCKIKKF IKAHRHHMKA QEEMKRSQVR LQKLGDQISL  240
DPLKTRANEE ESSVNVVSDA EPNDDGDNQI SSRNDFLQRD VSSAKRRAFV DPATSEEAKI  300
GNSRKRGRYS DSITKSEKLI KSEGPALNSE HNSKGTDTTK TVLINNKSLT DDYKHKQGKL  360
DSATTSPLDK VKGSESRRSL PSTSMAAHAV DELIEAIEME EKPETIETAK HIENADAENR  420
TKSACLPPPP PLVPQNAYKQ YEGDDEDVEV EKVDAEMVDI DIDSEVEIEQ I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102108RYRKKQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010931837.10.0PREDICTED: zinc finger CCCH domain-containing protein 13-like
TrEMBLM0S3750.0M0S375_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P26180_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38822943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.12e-47C3H family protein